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10.3.3, RHEL5, How I upgraded to php 5.2.8 and mysql 5.1.30

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Jan 20, 2009, 11:44 AM

#1

boing2

Junior Member

Join: Jul 2008

Posts: 18

Hi all,

I struggled a bit to get this working. Here are my notes, hopefully it'll help someone else out. Maybe someone can help automate the steps that don't work below.

10.3.3 RHEL 5 box.

To do this, I kind of followed many threads including:

http://forum.swsoft.com/showthread.php?t=56518

I used the remi repository to update php to 5.2.8 and mysql to 5.1.30:

http://rpms.famillecollet.com/

I setup yum for remi (commands for various OSes available on their site) and issued the command:

yum --enable remi update php mysql

I then edited:

/etc/init.d/mysqld_app_init

and changed a line from

chown root.mysql

to

chown mysql.mysql

I verified and added 3 lines (listed near the top in the 'added 2009.01.19 section') to:

/etc/virtualhosting/filelists/apache.sh

Which is as follows:

Code:

#!/bin/bash
# added 2009.01.19
echo "S,rpm:mysqlclient15"
echo "S,rpm:mysqlclient16"
echo "S,rpm:sqlite"
# /end added
cat <<EOF
S,rpm:httpd /etc/httpd$|/etc/httpd/conf$|/usr/bin|/usr/share/man|/usr/lib/lib
S,rpm:php !.*(httpd/conf.d/php.conf|pear/test/|php.ini)
T:/etc/php.ini
S,rpm:php-mysql
S,rpm:php-ldap
S,rpm:php-imap
N:S,rpm:php-gd
N:S,rpm:php-pear
N:S,rpm:php-snmp
N:S,rpm:php-odbc
N:S,rpm:php-domxml
N:S,rpm:php-xmlrpc
N:S,rpm:php-mhash
N:S,rpm:php-mbstring
N:S,rpm:php-mcrypt
N:S,rpm:libmcrypt
N:S,rpm:mcrypt
N:S,rpm:mhash
S,rpm:expat
EOF

if [ -e /etc/php.ini ]; then
if [ ! -e /etc/virtualhosting/templates/apache/etc ];then
mkdir -p /etc/virtualhosting/templates/apache/etc
fi
/bin/cp /etc/php.ini /etc/virtualhosting/templates/apache/etc/php.ini
fi

cat <<EOF
N:S,rpm:mysql /usr/lib/mysql/libmysqlclient.so.*
S,rpm:php-cli !/usr/share/man/.*
N:S,rpm:php-pdo
N:S,rpm:keyutils-libs
EOF

Ran Ensim through maintenance:

/usr/local/sbin/set_pre_maintenance

/usr/local/sbin/set_maintenance

/usr/local/sbin/set_post_maintenance

/sbin/service epld restart

SSH'ed in as root, I get:

Code:

[root@blah remi]# php -v
PHP 5.2.8 (cli) (built: Dec 9 2008 14:11:33)
Copyright (c) 1997-2008 The PHP Group
Zend Engine v2.2.0, Copyright (c) 1998-2008 Zend Technologies
[root@blah remi]# mysql -V
mysql Ver 14.14 Distrib 5.1.30, for redhat-linux-gnu (i686) using readline 5.1
[root@hostname32938 remi]#

Yay!

On Medium or Low security sites, same thing. Yay-yay!

On high security sites (even if I disable and re-enable the site), I get:

Code:

bash-3.2$ php -v
PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/mysql.so' - libmysqlclient.so.16: cannot open shared object file: No such file or directory in Unknown on line 0
PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/mysqli.so' - libmysqlclient.so.16: cannot open shared object file: No such file or directory in Unknown on line 0
PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/pdo_mysql.so' - libmysqlclient.so.16: cannot open shared object file: No such file or directory in Unknown on line 0
PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/sqlite.so' - libsqlite.so.0: cannot open shared object file: No such file or directory in Unknown on line 0
PHP 5.2.8 (cli) (built: Dec 9 2008 14:11:33)
Copyright (c) 1997-2008 The PHP Group
Zend Engine v2.2.0, Copyright (c) 1998-2008 Zend Technologies
bash-3.2$ mysql -V
mysql: error while loading shared libraries: libmysqlclient.so.16: cannot open shared object file: No such file or directory
bash-3.2$

And of course httpd/php have no clue about mysql.

Meh.

contents of /usr/lib/mysql/

lrwxrwxrwx 1 root root 26 Jan 19 18:16 libmysqlclient_r.so.15 -> libmysqlclient_r.so.15.0.0

-rwxr-xr-x 1 root root 1460748 Nov 29 09:25 libmysqlclient_r.so.15.0.0

lrwxrwxrwx 1 root root 26 Jan 19 18:16 libmysqlclient_r.so.16 -> libmysqlclient_r.so.16.0.0

-rwxr-xr-x 1 root root 1508268 Nov 29 09:57 libmysqlclient_r.so.16.0.0

lrwxrwxrwx 1 root root 24 Jan 19 18:16 libmysqlclient.so.15 -> libmysqlclient.so.15.0.0

-rwxr-xr-x 1 root root 1450280 Nov 29 09:25 libmysqlclient.so.15.0.0

lrwxrwxrwx 1 root root 24 Jan 19 18:16 libmysqlclient.so.16 -> libmysqlclient.so.16.0.0

-rwxr-xr-x 1 root root 1498920 Nov 29 09:57 libmysqlclient.so.16.0.0

lrwxrwxrwx 1 root root 21 Jan 19 18:16 libndbclient.so.3 -> libndbclient.so.3.0.0

-rwxr-xr-x 1 root root 1080864 Nov 29 09:57 libndbclient.so.3.0.0

-rwxr-xr-x 1 root root 13519 Nov 29 09:55 mysqlbug

-rwxr-xr-x 1 root root 6341 Nov 29 09:55 mysql_config

contents of /home/virtual/site1/fst/usr/lib/mysql/

lrwxrwxrwx 1 root root 26 Jan 19 19:44 libmysqlclient_r.so.15 -> libmysqlclient_r.so.15.0.0

-rwxr-xr-x 3 root root 1460748 Nov 29 09:25 libmysqlclient_r.so.15.0.0

lrwxrwxrwx 1 root root 24 Jan 19 19:44 libmysqlclient.so.15 -> libmysqlclient.so.15.0.0

-rwxr-xr-x 3 root root 1450280 Nov 29 09:25 libmysqlclient.so.15.0.0

-rwxr-xr-x 3 root root 13519 Nov 29 09:55 mysqlbug

-rwxr-xr-x 3 root root 6341 Nov 29 09:55 mysql_config

so, I:

cp /usr/lib/mysql/* /home/virtual/site1/fst/usr/lib/mysql/

Ran Ensim through maintenance:

/usr/local/sbin/set_pre_maintenance

/usr/local/sbin/set_maintenance

/usr/local/sbin/set_post_maintenance

/sbin/service epld restart

This got rid of the mysql error, and all but one of the php errors. Now we are left with:

Code:

bash-3.2$ php -v
PHP Warning: PHP Startup: Unable to load dynamic library '/usr/lib/php/modules/sqlite.so' - libsqlite.so.0: cannot open shared object file: No such file or directory in Unknown on line 0

cp /usr/lib/libsqlite* /home/virtual/site2/fst/usr/lib/

Didn't have to run Ensim through maintenance this time.

Bam - high security, low security, medium security sites know about mysql.

So, in the grand scheme of things, anyone know how to get those files copied upon the creation of a new site via Ensim? I was thinking it was in that /etc/virtualhosting/filelists/apache.sh, but I guess not?

Thx,

boing?

Jan 22, 2009, 06:44 AM

#2

DeepM

Senior Member

Join: Dec 2007

Posts: 221

For sqlite problem add

N:S,rpm:sqlite2

What about mysql, does all sites worked corectly with new mysql version?

__________________

[I]--=== I'm looking for ensim support/install jobs. ===--[/I]

Jan 22, 2009, 09:26 AM

#3

UH-Matt

Senior Member

Join: Jan 2008

Posts: 105

you may want to try adding mysql-libs to the file list and run maint mode again. I know just to be safe we have mysqlclient14, mysqlclient15, mysqlclient16, and mysql-libs all in our custom file list, to cover all bases...

__________________

Matt Wallis

Company Director

[COLOR="DarkRed"][B]United Communications Limited[/B][/COLOR]

Shared | Reseller | Managed Dedicated

[URL="http://www.unitedhosting.co.uk"]www.unitedhosting.co.uk[/URL] | [URL="http://www.unitedhosting.com"]www.unitedhosting.com[/URL]

*Parallels Platinum Partner*

Jan 23, 2009, 10:11 AM

#4

boing2

Junior Member

Join: Jul 2008

Posts: 18

DeepM: thus far, I've only setup a test script that just spits out some data from the dB 'mysql'. And that works fine (via php).

Code:

<?

$link = mysql_connect("localhost", "user", "pass") or die("<font color=\"red\">Error: File: ".__FILE__." Line: ".__LINE__."<BR>Mysql Error: Could not co
nnect.</font>");
mysql_select_db("mysql") or die("<font color=\"red\">Error: File: ".__FILE__." Line: ".__LINE__."<BR>Mysql Error: Could not select database.</font>");

$abcmysqlstring = "SELECT * FROM help_keyword;";
if($abcdiag) {echo "<BR><font color=\"orange\">File: ".__FILE__." Line: ".__LINE__.": abcmysqlstring = $abcmysqlstring</font><BR>"; }
$results = mysql_query($abcmysqlstring) or die ("<font color=\"red\">Error: File: ".__FILE__." Line: ".__LINE__."<BR>Mysql Error: ".mysql_error()."<BR>$my_sql
<BR></font>");
while ($row = mysql_fetch_array($results)){
echo "$row[name]<BR>";
}

?>

and to both DeepM and UH-Matt: great calls! I added those lines to /etc/virtualhosting/filelists/apache.sh and now new domains don't get these php and mysql errors. Thanks!

I know it's not as clean as it could be, but I've added:

Code:

#!/bin/bash
# added 2009.01.19
echo "S,rpm:mysqlclient14"
echo "S,rpm:mysqlclient15"
echo "S,rpm:mysqlclient16"
echo "S,rpm:sqlite"
# /end added
cat <<EOF
N:S,rpm:sqlite2
N:S,rpm:mysql-libs

I researched but had a hard time finding an answer... What's the N:S vs. S do in those statements? I understand that 'echo' vs. the cat statement is 'more than 1 way to skin a cat', but are my N:S vs. just S correct in these calls as listed above?

Jan 23, 2009, 10:24 AM

#5

DeepM

Senior Member

Join: Dec 2007

Posts: 221

After migration of PHP4->PHP5 some(lot) sites may stop working correctly.

So what about MySQL5.0->MySQL5.1 migration, can it broke some sites?

__________________

[I]--=== I'm looking for ensim support/install jobs. ===--[/I]

Jan 25, 2009, 03:45 PM

#6

UH-Matt

Senior Member

Join: Jan 2008

Posts: 105

We recently upgraded our server fleet from MySQL 4 to MySQL5.

We attempted to go to 5.1.30 but had huge problems of various natures, so actually stopped at 5.0.67 for now.

__________________

Matt Wallis

Company Director

[COLOR="DarkRed"][B]United Communications Limited[/B][/COLOR]

Shared | Reseller | Managed Dedicated

[URL="http://www.unitedhosting.co.uk"]www.unitedhosting.co.uk[/URL] | [URL="http://www.unitedhosting.com"]www.unitedhosting.com[/URL]

*Parallels Platinum Partner*

Jan 25, 2009, 03:46 PM

#7

UH-Matt

Senior Member

Join: Jan 2008

Posts: 105

Quote:

I researched but had a hard time finding an answer... What's the N:S vs. S do in those statements? I understand that 'echo' vs. the cat statement is 'more than 1 way to skin a cat', but are my N:S vs. just S correct in these calls as listed above?

I am guessing but wonder if S means something like its just a sym link to the FST and not actually propogating a copy fo the files from the rpm to each site.....

__________________

Matt Wallis

Company Director

[COLOR="DarkRed"][B]United Communications Limited[/B][/COLOR]

Shared | Reseller | Managed Dedicated

[URL="http://www.unitedhosting.co.uk"]www.unitedhosting.co.uk[/URL] | [URL="http://www.unitedhosting.com"]www.unitedhosting.com[/URL]

*Parallels Platinum Partner*

Jan 26, 2009, 01:13 PM

#8

boing2

Junior Member

Join: Jul 2008

Posts: 18

UH-Matt: what type of problems did you run into?

If I could have, I probably would have stopped at mysql 5.0.x, but I could not figure out how to get to php 5.2.8 and mysql 5.0.x.

Jan 26, 2009, 05:39 PM

#9

boing2

Junior Member

Join: Jul 2008

Posts: 18

OK, to get GD working, I had to:

Code:

yum --enable remi install php-gd

The php-gd stuff copied over just fine. But these two dependencies did not and I had to copy them by hand:

Code:

cp /usr/lib/libt1.so.5 /home/virtual/site1/fst/usr/lib
cp /usr/lib/libXpm.so.4 /home/virtual/site1/fst/usr/lib

Any ideas on what to add to /etc/virtualhosting/filelists/apache.sh to get those to copy over nicely?

I then did my first vhimport from a 10.2.0/RHEL4/php5.2.0/mysql4.1.20 server.

Code:

vhimport -r appliance -U file:///path/to/exported/site1.tar.gz

The import failed. I forget which thread I read it in, but I remembered how in 10.3.x the vhimport has file conflicts as it creates a blank site and then errors out because the default ensim files exist while the import tries to overwrite them. So I then did a:

Code:

rm -rf /home/virtual/site1/fst/var/www/html/default.css /home/virtual/site1/fst/var/www/html/images

and then re-imported. This time I got all of my files and site settings. But the dB should have been named:

domain_com_-_site

and instead was named:

#mysql50#domain_com_-_site

Couple quick googles, found out it was a compatibility issue of older commands used to create the dB (I think?). Issued the command:

Code:

mysqlcheck -u user_with_oodles_of_privs -p --check-upgrade --fix-db-names --fix-table-names "#mysql50#domain_com_-_site";

This fixed the dB to be named:

domain_com_-_site

Another site import still did not populate it though. I had to export in phpMyAdmin and then import via phpMyAdmin.

Incidentally, if you create a dB via the Ensim control panel w/ mysql 5.1.x, here are some observations (Is Ensim reading? ):

Ensim prefixes the #mysql50# to the dB name.

Ensim lists the dB withOUT the #mysql50# prefix in the control panel, however the prefix is apparent via command line or phpMyAdmin.

You can delete the dB via Ensim even though it doesn't show the prefix.

You can use this dB on your site as long as you include the #mysql50# in your dB name as long as you haven't done the mysqlcheck repair command yet.

If you create the dB in Ensim, repair it from command line w/ the mysqlcheck command, Ensim can no longer delete the dB.

After all of this, I was able to add a photo to Menalto's G2 Gallery and it resized the thumbnails correctly.

Jan 29, 2009, 04:07 PM

#10

boing2

Junior Member

Join: Jul 2008

Posts: 18

DeepM: In continuation on the broken site question: I have sites working with OSCommerce, Gallery2, Gallery1 (although it doesn't use mysql, but it does use GD), and Posnuke (although Postnuke has been abandoned of course!).

No tricks were needed once GD was installed, they all worked 'out of the box'.

Thanks,

-boing2

Jan 30, 2009, 01:47 AM

#11

DeepM

Senior Member

Join: Dec 2007

Posts: 221

>OSCommerce, Gallery2, Gallery1

I'm interested how will work ezpublish, magento, joomla, bitrix and etc.

__________________

[I]--=== I'm looking for ensim support/install jobs. ===--[/I]

Jan 31, 2009, 05:36 PM

#12

boing2

Junior Member

Join: Jul 2008

Posts: 18

I can at least answer joomla for you: no problems on my one site that has joomla.

Feb 2, 2009, 02:59 AM

#13

cepheid

Senior Member

Join: Nov 2008

Posts: 242

I noticed that the original /etc/init.d/mysqld_app_init has a "chown root.mysql /var/lib/mysql" line in it, which causes /var/lib/mysql to be owned by root every time mysqld starts. However, because mysql uses /var/lib/mysql as its temp directory, this causes problems when using phpMyAdmin, e.g. trying to edit DB entries through phpMyAdmin. If /var/lib/mysql is owned by mysql, this problem disappears.

Is there any reason that /var/lib/mysql is being chowned to root, and/or is there any particular problem if I change /etc/init.d/mysqld_app_init so that /var/lib/mysql will be owned by mysql, instead?

Feb 2, 2009, 11:52 AM

#14

boing2

Junior Member

Join: Jul 2008

Posts: 18

cepheid: seems to be a common problem as of one of the later releases. I made this change as well (as indicated in the first post) and it has been working fine. HTH!

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